PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim05g051420.0.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ZF-HD
Protein Properties Length: 168aa    MW: 19300.4 Da    PI: 10.3555
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim05g051420.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer83.91.9e-26351559
         ZF-HD_dimer  5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59
                        +YkeClkNhAa +GghavDGCgEfmps       + +kCa C+CHRnFHR+++++
  Sopim05g051420.0.1  3 KYKECLKNHAAGIGGHAVDGCGEFMPS------GDIFKCAVCNCHRNFHRKDTVH 51
                        8*************************9......3569**************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-15249IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.4E-24348IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.3E-23349IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152322.551448IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.9E-1599163IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.3E-26102164IPR009057Homeodomain-like
TIGRFAMsTIGR015654.1E-23102158IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MSKYKECLKN HAAGIGGHAV DGCGEFMPSG DIFKCAVCNC HRNFHRKDTV HHHHPCGYFP  60
HIMPRRRSLV LPSTSRGGGF REDQELLEMC NPNKNIIGTL LKKRFRTKFS QEHKDKMLRL  120
AEKLGWKLQR HDEGVVQQLC NEIGIKRHVF KVWLHNNKHT LGKKTNP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-211031601875ZF-HD homeobox family protein
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755171e-153HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010321484.11e-123PREDICTED: zinc-finger homeodomain protein 1-like
SwissprotQ6YXH51e-55ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBLK4C1H31e-123K4C1H3_SOLLC; Uncharacterized protein
STRINGSolyc05g051420.1.11e-122(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51824128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.13e-55homeobox protein 21